PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G025100.1
Common NameB456_013G025100, LOC105781882
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 220aa    MW: 24226.2 Da    PI: 7.1396
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G025100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-2072122256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr++  +g+WvAeIr+p+   k kr +lg+f ta++Aa a+++a+k ++ge
  Gorai.013G025100.1  72 IYRGVRQRT-WGKWVAEIRVPN---KGKRLWLGTFPTAFQAALAYDEAAKTMYGE 122
                         6*****999.**********93...25*************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-1471122IPR001471AP2/ERF domain
CDDcd000188.46E-2971130No hitNo description
SuperFamilySSF541712.03E-2072130IPR016177DNA-binding domain
SMARTSM003801.6E-3372135IPR001471AP2/ERF domain
PROSITE profilePS5103221.39172129IPR001471AP2/ERF domain
PRINTSPR003671.3E-97384IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-2973130IPR001471AP2/ERF domain
PRINTSPR003671.3E-995111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MGFSENQNPN VGIPLFLDSS RKRKRRNGLS VADTLKQWSE NSDTKKALKP PAKGSKKGCM  60
KGKGGPQNQN CIYRGVRQRT WGKWVAEIRV PNKGKRLWLG TFPTAFQAAL AYDEAAKTMY  120
GEKAILNMPH GSDTTTTTSA SSESTTATAS DVKAEVREEA KVLAEEDESM KEMDYSWLNG  180
LEFKDDIALN CGANNNISVW DGGWLFNEDD CFSIDELLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A9e-1873129663ATERF1
2gcc_A9e-1873129663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12025RKRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461862.11e-163PREDICTED: dehydration-responsive element-binding protein 2A-like
SwissprotQ8LFR22e-47DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLA0A0D2W2711e-163A0A0D2W271_G
STRINGBra017011.1-P4e-49(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85322538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.28e-36DRE-binding protein 2A
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]